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Crystal structure of the PH domain of human Actin-binding protein anillin ANLN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FHW PDB ENTRIES 1FHW, 1U27, 1U29, 1U2B, 2R0D experimental model PDB 1U27 PDB ENTRIES 1FHW, 1U27, 1U29, 1U2B, 2R0D experimental model PDB 1U29 PDB ENTRIES 1FHW, 1U27, 1U29, 1U2B, 2R0D experimental model PDB 1U2B PDB ENTRIES 1FHW, 1U27, 1U29, 1U2B, 2R0D experimental model PDB 2R0D PDB ENTRIES 1FHW, 1U27, 1U29, 1U2B, 2R0D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 20% PEG3350, 100 MM BIS-TRIS PH 5.5, 40% ACETONITRILE
Crystal Properties Matthews coefficient Solvent content 2.03 39.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.3 α = 90 b = 59.417 β = 90 c = 64.717 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2010-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 18.94 99.6 0.14 9.1 4.7 10888 2 20.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 99.8 0.96 2 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1FHW, 1U27, 1U29, 1U2B, 2R0D 1.9 18.45 10299 526 99.24 0.19518 0.19197 0.1981 0.26211 0.2653 RANDOM 22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.99 -1.59 -1.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.663 r_dihedral_angle_4_deg 16.069 r_dihedral_angle_3_deg 12.673 r_scangle_it 8.131 r_dihedral_angle_1_deg 6.1 r_scbond_it 6.087 r_mcangle_it 4.422 r_mcbond_it 3.355 r_angle_refined_deg 1.552 r_mcbond_other 1.349
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.663 r_dihedral_angle_4_deg 16.069 r_dihedral_angle_3_deg 12.673 r_scangle_it 8.131 r_dihedral_angle_1_deg 6.1 r_scbond_it 6.087 r_mcangle_it 4.422 r_mcbond_it 3.355 r_angle_refined_deg 1.552 r_mcbond_other 1.349 r_angle_other_deg 0.876 r_chiral_restr 0.105 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1087 Nucleic Acid Atoms Solvent Atoms 78 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing