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Structure of the TetX monooxygenase in complex with the substrate 7- chlortetracycline
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XDO PDB ENTRY 2XDO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7
Crystal Properties Matthews coefficient Solvent content 2.36 47.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.416 α = 110.99 b = 78.87 β = 90.27 c = 86.609 γ = 92.87
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH SX-165 2010-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.3 BESSY 14.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.09 48.33 96.2 0.11 9.6 2.2 29712 56.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.09 3.21 92.5 0.43 2.1 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2XDO 3.1 48.33 28232 1493 98.46 0.22672 0.22509 0.2217 0.25616 0.2528 RANDOM 75.959
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.37 -0.18 -0.37 -3.44 -2.55 -3.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.159 r_dihedral_angle_3_deg 17.957 r_dihedral_angle_4_deg 17.01 r_dihedral_angle_1_deg 6.597 r_scangle_it 2.013 r_angle_refined_deg 1.439 r_scbond_it 1.12 r_mcangle_it 0.821 r_mcbond_it 0.437 r_chiral_restr 0.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.159 r_dihedral_angle_3_deg 17.957 r_dihedral_angle_4_deg 17.01 r_dihedral_angle_1_deg 6.597 r_scangle_it 2.013 r_angle_refined_deg 1.439 r_scbond_it 1.12 r_mcangle_it 0.821 r_mcbond_it 0.437 r_chiral_restr 0.096 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11265 Nucleic Acid Atoms Solvent Atoms 94 Heterogen Atoms 399
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALEPACK data scaling