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ligand-free form of TetR-like repressor SimR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 HANGING DROP VAPOUR DIFFUSION. PROTEIN AT 5MG/ML IN 25MM TRIS-HCL PH8.4, 300MM NACL MIXED WITH 2% PEG 10000, 0.2M AMMONIUM ACETATE IN 0.1M BIS-TRIS PH5.5 IN 1 TO 1 RATIO.
Crystal Properties Matthews coefficient Solvent content 2.35 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.06 α = 90 b = 116.06 β = 90 c = 109.381 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-04-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 48.04 99.8 0.07 20.6 7.8 20761 -3 31.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.06 100 0.57 3.8 7.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.95 37 19717 1044 99.82 0.20634 0.20486 0.23366 0.2693 RANDOM 37.312
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.67 -0.34 -0.67 1.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.559 r_dihedral_angle_3_deg 16.16 r_dihedral_angle_4_deg 13.898 r_dihedral_angle_1_deg 5.696 r_scangle_it 3.896 r_scbond_it 2.536 r_mcangle_it 1.628 r_angle_refined_deg 1.572 r_angle_other_deg 0.959 r_mcbond_it 0.937
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.559 r_dihedral_angle_3_deg 16.16 r_dihedral_angle_4_deg 13.898 r_dihedral_angle_1_deg 5.696 r_scangle_it 3.896 r_scbond_it 2.536 r_mcangle_it 1.628 r_angle_refined_deg 1.572 r_angle_other_deg 0.959 r_mcbond_it 0.937 r_mcbond_other 0.251 r_chiral_restr 0.1 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1881 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHELX phasing