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Pseudomonas aeruginosa Azurin with mutated metal-binding loop sequence (CAAHAAM), chemically reduced, pH4.8
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FS9 PDB ENTRY 3FS9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.8 293 0.1M POTASSIUM THIOCYANATE, 30% PEG2000, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 1.97 37.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.987 α = 90 b = 46.149 β = 90 c = 57.929 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 40 100 0.03 45.6 10.1 14711
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 98.8 0.15 14.1 9.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3FS9 1.6 36.08 13915 753 99.97 0.14919 0.14654 0.1561 0.19883 0.203 RANDOM 10.874
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 0.41 -0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.149 r_dihedral_angle_3_deg 12.319 r_dihedral_angle_4_deg 10.676 r_sphericity_free 8.13 r_dihedral_angle_1_deg 6.105 r_scangle_it 4.324 r_scbond_it 3.37 r_sphericity_bonded 3.228 r_mcangle_it 2.299 r_mcbond_it 1.903
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.149 r_dihedral_angle_3_deg 12.319 r_dihedral_angle_4_deg 10.676 r_sphericity_free 8.13 r_dihedral_angle_1_deg 6.105 r_scangle_it 4.324 r_scbond_it 3.37 r_sphericity_bonded 3.228 r_mcangle_it 2.299 r_mcbond_it 1.903 r_rigid_bond_restr 1.745 r_angle_refined_deg 1.577 r_angle_other_deg 0.941 r_mcbond_other 0.61 r_symmetry_vdw_other 0.225 r_nbd_refined 0.212 r_nbd_other 0.202 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.171 r_symmetry_vdw_refined 0.132 r_symmetry_hbond_refined 0.118 r_chiral_restr 0.103 r_nbtor_other 0.089 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 929 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling