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K2PtBr6 binding to lysozyme
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.7 10% SODIUM CHLORIDE W/V; PH 4.7 0.04M SODIUM ACETATE BUFFER; 80MG OF LYSOZYME PROTEIN 2ML AQUEOUS.
Crystal Properties Matthews coefficient Solvent content 1.94 36.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.64 α = 90 b = 78.64 β = 90 c = 36.45 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU R-AXIS IV OSMIC CONFOCAL MAX-FLUX 2008-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.53 55.6 87.2 0.08 2.2 6.17 12866 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.53 1.58 23.2 0.29 2.2 1.89
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.8 55.64 10509 556 100 0.2 0.198 0.2118 0.249 0.2626 RANDOM 17.91
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 -0.48 0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.973 r_dihedral_angle_4_deg 23.598 r_dihedral_angle_3_deg 14.592 r_dihedral_angle_1_deg 6.137 r_scangle_it 3.522 r_scbond_it 2.188 r_mcangle_it 1.397 r_angle_refined_deg 1.336 r_mcbond_it 0.862 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.973 r_dihedral_angle_4_deg 23.598 r_dihedral_angle_3_deg 14.592 r_dihedral_angle_1_deg 6.137 r_scangle_it 3.522 r_scbond_it 2.188 r_mcangle_it 1.397 r_angle_refined_deg 1.336 r_mcbond_it 0.862 r_nbtor_refined 0.298 r_xyhbond_nbd_refined 0.248 r_nbd_refined 0.202 r_symmetry_hbond_refined 0.197 r_symmetry_vdw_refined 0.186 r_chiral_restr 0.104 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling REFMAC phasing