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Crystal structure of human beta enolase ENOB
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TE6 PDB ENTRIES 1TE6, 2AKM, 2AKZ, 2PSN AND 3B97 experimental model PDB 2AKM PDB ENTRIES 1TE6, 2AKM, 2AKZ, 2PSN AND 3B97 experimental model PDB 2AKZ PDB ENTRIES 1TE6, 2AKM, 2AKZ, 2PSN AND 3B97 experimental model PDB 2PSN PDB ENTRIES 1TE6, 2AKM, 2AKZ, 2PSN AND 3B97 experimental model PDB 3B97 PDB ENTRIES 1TE6, 2AKM, 2AKZ, 2PSN AND 3B97
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.1M NA_ACETATE, 25% PEG_8000, 0.1M CACODYLATE PH 7
Crystal Properties Matthews coefficient Solvent content 2.65 53.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.878 α = 90 b = 105.531 β = 90 c = 106.091 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2010-08-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.49 96.4 0.09 15.7 8.7 114102 2 16.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 94.6 0.72 3.1 8.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1TE6, 2AKM, 2AKZ, 2PSN AND 3B97 1.7 29.39 108327 5697 96.08 0.15463 0.15282 0.1612 0.18905 0.1957 RANDOM 19.721
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 1.24 -0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.331 r_dihedral_angle_4_deg 15.647 r_dihedral_angle_3_deg 12.89 r_dihedral_angle_1_deg 5.99 r_scangle_it 5.422 r_scbond_it 4.339 r_mcangle_it 3.094 r_mcbond_it 2.544 r_angle_other_deg 2.069 r_angle_refined_deg 1.525
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.331 r_dihedral_angle_4_deg 15.647 r_dihedral_angle_3_deg 12.89 r_dihedral_angle_1_deg 5.99 r_scangle_it 5.422 r_scbond_it 4.339 r_mcangle_it 3.094 r_mcbond_it 2.544 r_angle_other_deg 2.069 r_angle_refined_deg 1.525 r_mcbond_other 1.103 r_chiral_restr 0.091 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6592 Nucleic Acid Atoms Solvent Atoms 1083 Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing