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Crystal structure of the RRM domain of mouse Deleted in azoospermia-like in complex with RNA, UUGUUCUU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 10 MM MAGNESIUM FORMATE, 20 % (W/V) PEG 3350, 0.1 MM ZINC ACETATE
Crystal Properties Matthews coefficient Solvent content 2.73 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.1 α = 90 b = 52.06 β = 90 c = 60.49 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD KIRKPATRICK BAEZ BIMORPH MIRROR PAIR FOR HORIZONTAL AND VERTICAL FOCUSSING 2010-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 27.41 96 0.06 15 5.4 26034 6 16.33
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.42 87.3 0.65 2.4 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.35 27.41 24721 1313 96.05 0.16292 0.16131 0.19267 0.1938 RANDOM 19.382
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.23 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.729 r_dihedral_angle_4_deg 26.313 r_dihedral_angle_3_deg 10.858 r_dihedral_angle_1_deg 6.297 r_scangle_it 5.342 r_scbond_it 3.807 r_mcangle_it 2.864 r_rigid_bond_restr 1.971 r_mcbond_it 1.83 r_angle_refined_deg 1.642
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.729 r_dihedral_angle_4_deg 26.313 r_dihedral_angle_3_deg 10.858 r_dihedral_angle_1_deg 6.297 r_scangle_it 5.342 r_scbond_it 3.807 r_mcangle_it 2.864 r_rigid_bond_restr 1.971 r_mcbond_it 1.83 r_angle_refined_deg 1.642 r_nbtor_refined 0.313 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.171 r_symmetry_hbond_refined 0.118 r_chiral_restr 0.11 r_xyhbond_nbd_refined 0.109 r_symmetry_metal_ion_refined 0.062 r_metal_ion_refined 0.03 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 679 Nucleic Acid Atoms 124 Solvent Atoms 129 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHELX phasing