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Crystal structure of a GTPyS-form protofilament of Bacillus thuringiensis serovar israelensis TubZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 TRISCL PH 8.5 200 MM MGCL2 30% PEG 400 WV
Crystal Properties Matthews coefficient Solvent content 2.08 40.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.06 α = 90 b = 85.15 β = 90 c = 632.23 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2008-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 52.69 93.2 0.12 0.122 7.4 3 52941 2 47.86
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.16 71 0.34 0.339 3.6 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 3 50 50190 2649 92.5 0.23459 0.23198 0.28438 0.2396 RANDOM 24.013
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.12 -2.64 -3.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.375 r_dihedral_angle_3_deg 20.522 r_dihedral_angle_4_deg 18.433 r_dihedral_angle_1_deg 6.677 r_scangle_it 1.452 r_angle_refined_deg 1.333 r_mcangle_it 1.054 r_angle_other_deg 0.972 r_scbond_it 0.801 r_mcbond_it 0.568
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.375 r_dihedral_angle_3_deg 20.522 r_dihedral_angle_4_deg 18.433 r_dihedral_angle_1_deg 6.677 r_scangle_it 1.452 r_angle_refined_deg 1.333 r_mcangle_it 1.054 r_angle_other_deg 0.972 r_scbond_it 0.801 r_mcbond_it 0.568 r_symmetry_vdw_other 0.259 r_symmetry_vdw_refined 0.213 r_symmetry_hbond_refined 0.194 r_xyhbond_nbd_refined 0.155 r_chiral_restr 0.076 r_mcbond_other 0.059 r_xyhbond_nbd_other 0.03 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22407 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 231
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELX phasing SOLVE phasing REFMAC refinement