X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2WK0PDB ENTRY 2WK0

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.5551.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 103.308α = 90
b = 91.568β = 94.37
c = 106.871γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray273CCDMARRESEARCH SX-165MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM30AESRFBM30A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.43399.70.19.73.6775882
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.5399.40.482.63.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2WK02.432.4373667390199.670.202650.199480.26225RANDOM26.566
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.451.272.04-0.4
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.087
r_dihedral_angle_3_deg16.103
r_dihedral_angle_4_deg13.914
r_dihedral_angle_1_deg6.261
r_scangle_it1.968
r_angle_refined_deg1.244
r_scbond_it1.203
r_mcangle_it0.775
r_mcbond_it0.439
r_nbtor_refined0.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.087
r_dihedral_angle_3_deg16.103
r_dihedral_angle_4_deg13.914
r_dihedral_angle_1_deg6.261
r_scangle_it1.968
r_angle_refined_deg1.244
r_scbond_it1.203
r_mcangle_it0.775
r_mcbond_it0.439
r_nbtor_refined0.3
r_symmetry_vdw_refined0.201
r_nbd_refined0.193
r_xyhbond_nbd_refined0.14
r_symmetry_hbond_refined0.129
r_chiral_restr0.079
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13391
Nucleic Acid Atoms
Solvent Atoms555
Heterogen Atoms150

Software

Software
Software NamePurpose
REFMACrefinement