☰ Navigation Tabs
Ribonucleotide reductase Y731NO2Y and Y730F modified R1 subunit of E. coli
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2X0X PDB ENTRY 2X0X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 LITHIUM SULPHATE 1.5M, SODIUM CHLORIDE BUFFER PH 6.
Crystal Properties Matthews coefficient Solvent content 3.16 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 224.664 α = 90 b = 224.664 β = 90 c = 336.361 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2009-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 84.21 93.7 0.15 12.93 5.97 75099 -3.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.82 96.8 0.58 2.3 5.54
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2X0X 2.8 169.031 2 75098 3788 93.7 0.173 0.1687 0.2473 0.2248 RANDOM 41.358
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.185 0.092 0.185 -0.277
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.732 r_dihedral_angle_3_deg 20.088 r_dihedral_angle_4_deg 19.1 r_dihedral_angle_1_deg 6.739 r_scangle_it 2.997 r_scbond_it 1.829 r_angle_refined_deg 1.596 r_mcangle_it 1.36 r_mcbond_it 0.752 r_nbtor_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.732 r_dihedral_angle_3_deg 20.088 r_dihedral_angle_4_deg 19.1 r_dihedral_angle_1_deg 6.739 r_scangle_it 2.997 r_scbond_it 1.829 r_angle_refined_deg 1.596 r_mcangle_it 1.36 r_mcbond_it 0.752 r_nbtor_refined 0.315 r_symmetry_hbond_refined 0.279 r_nbd_refined 0.241 r_symmetry_vdw_refined 0.228 r_xyhbond_nbd_refined 0.181 r_chiral_restr 0.108 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17832 Nucleic Acid Atoms Solvent Atoms 627 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction TRUNCATE data scaling