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Crystal structure of LSD1-CoREST in complex with a tranylcypromine derivative (MC2580, 14e)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 SODIUM-POTASSIUM TARTRATE, ADA BUFFER PH 6.5
Crystal Properties Matthews coefficient Solvent content 4.28 71.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.317 α = 90 b = 179.693 β = 90 c = 235.257 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 30 99.9 0.09 12.2 3.7 41634 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.2 71.4 40830 803 99.78 0.20016 0.19974 0.1983 0.22039 0.2152 RANDOM 75.661
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.79 -3.18 -2.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.444 r_dihedral_angle_3_deg 22.085 r_dihedral_angle_4_deg 19.879 r_dihedral_angle_1_deg 6.804 r_scangle_it 3.189 r_scbond_it 1.743 r_angle_refined_deg 1.587 r_mcangle_it 1.508 r_mcbond_it 0.782 r_chiral_restr 0.106
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.444 r_dihedral_angle_3_deg 22.085 r_dihedral_angle_4_deg 19.879 r_dihedral_angle_1_deg 6.804 r_scangle_it 3.189 r_scbond_it 1.743 r_angle_refined_deg 1.587 r_mcangle_it 1.508 r_mcbond_it 0.782 r_chiral_restr 0.106 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6293 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 85
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling