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Evolutionary basis of HIV restriction by the antiretroviral TRIMCyp
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 290 0.33 mM each of Mafa Cyp and HIV-1 CAN in 20 mM HEPES pH 7, 50 mM NaCl, 1 mM DTT was mixed with reservoir solution (30% PEG 6000, 1 M LiCl, 0.1 M HEPES pH 7, 0.5% ethyl acetate
Crystal Properties Matthews coefficient Solvent content 1.82 32.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.52 α = 90 b = 110.15 β = 101.59 c = 67.76 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 95.1 0.06 9.1 2.4 60435 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.7 66.38 55058 2942 96 0.163 0.158 0.1693 0.246 0.2539 RANDOM 24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.03 -1.22 1.72 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.223 r_dihedral_angle_4_deg 21.623 r_dihedral_angle_3_deg 16.303 r_scangle_it 6.509 r_dihedral_angle_1_deg 6.352 r_scbond_it 4.531 r_mcangle_it 2.965 r_mcbond_it 1.923 r_rigid_bond_restr 1.91 r_angle_refined_deg 1.803
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.223 r_dihedral_angle_4_deg 21.623 r_dihedral_angle_3_deg 16.303 r_scangle_it 6.509 r_dihedral_angle_1_deg 6.352 r_scbond_it 4.531 r_mcangle_it 2.965 r_mcbond_it 1.923 r_rigid_bond_restr 1.91 r_angle_refined_deg 1.803 r_angle_other_deg 1.052 r_mcbond_other 0.635 r_chiral_restr 0.112 r_bond_refined_d 0.021 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4751 Nucleic Acid Atoms Solvent Atoms 634 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement