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Crystal structure of mevalonate kinase from methicillin-resistant Staphylococcus aureus MRSA252
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 0.1 M CITRIC ACID PH 4.0, 3.6 M SODIUM CHLORIDE. THE CRYSTALS WERE CRYOPROTECTED BY ADDING 25% PEG400 INTO THE SCREEN SOLUTION.
Crystal Properties Matthews coefficient Solvent content 3.3 62.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.589 α = 90 b = 94.589 β = 90 c = 169.01 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 2008-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 81.92 80.3 0.1 14.6 5.6 17784
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 50.2 0.37 2.1 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT NONE 2.2 81.92 17784 967 80.29 0.21335 0.21105 0.2284 0.2573 0.2706 RANDOM 31.542
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.33 1.67 3.33 -5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.183 r_dihedral_angle_3_deg 14.935 r_dihedral_angle_4_deg 14.875 r_dihedral_angle_1_deg 5.648 r_scangle_it 1.96 r_scbond_it 1.159 r_angle_refined_deg 1.07 r_angle_other_deg 0.811 r_mcangle_it 0.742 r_mcbond_it 0.385
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.183 r_dihedral_angle_3_deg 14.935 r_dihedral_angle_4_deg 14.875 r_dihedral_angle_1_deg 5.648 r_scangle_it 1.96 r_scbond_it 1.159 r_angle_refined_deg 1.07 r_angle_other_deg 0.811 r_mcangle_it 0.742 r_mcbond_it 0.385 r_mcbond_other 0.069 r_chiral_restr 0.062 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2232 Nucleic Acid Atoms Solvent Atoms 126 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling