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The crystal structure of MFE1 liganded with CoA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZCJ PDB ENTRIES 1ZCJ, 1WDK experimental model PDB 1WDK PDB ENTRIES 1ZCJ, 1WDK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 100MM MES PH 6.0, 150MM AMMONIUM SULPHATE, 15% W/V PEG4000
Crystal Properties Matthews coefficient Solvent content 2.8 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.7 α = 90 b = 126.5 β = 90 c = 227.07 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2009-05-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 46.2 98.1 0.14 11.5 6.2 46656 57.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 98 0.66 2.6 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1ZCJ, 1WDK 2.8 46.19 44229 2364 97.94 0.22679 0.22389 0.2191 0.28196 0.2738 RANDOM 40.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.5 -1.89 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.685 r_dihedral_angle_3_deg 19.184 r_dihedral_angle_4_deg 17.783 r_dihedral_angle_1_deg 6.226 r_scangle_it 3.064 r_scbond_it 1.694 r_angle_refined_deg 1.581 r_mcangle_it 1.229 r_mcbond_it 0.638 r_chiral_restr 0.106
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.685 r_dihedral_angle_3_deg 19.184 r_dihedral_angle_4_deg 17.783 r_dihedral_angle_1_deg 6.226 r_scangle_it 3.064 r_scbond_it 1.694 r_angle_refined_deg 1.581 r_mcangle_it 1.229 r_mcbond_it 0.638 r_chiral_restr 0.106 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11096 Nucleic Acid Atoms Solvent Atoms 227 Heterogen Atoms 166
Software Software Software Name Purpose REFMAC refinement PHASER phasing