☰ Navigation Tabs
Crystal structure of SAR1376, a putative 4-oxalocrotonate tautomerase from the methicillin-resistant Staphylococcus aureus (MRSA)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 1.49M AMMONIUM SULFATE, 0.1M SODIUM ACETATE PH 5.0, 0.1M ZINC SULFATE, 25% ETHYLENE GLYCOL. CRYSTAL WAS CRYOPROTECTED DIRECTLY IN THIS SOLUTION WITH AMMONIUM SULPHATE CONCENTRATION OF 1.6M
Crystal Properties Matthews coefficient Solvent content 1.98 37.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.19 α = 90 b = 50.19 β = 90 c = 150.62 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE FUJIFILM MIRRORS 2007-11-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 28.4 98.7 0.05 22.7 11.7 19685
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.13 98.3 0.44 4.35 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 1.1 28.46 43774 2291 98.73 0.188 0.18763 0.2186 0.19533 0.2283 RANDOM 9.348
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.07 -0.14 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.12 r_dihedral_angle_4_deg 16.653 r_dihedral_angle_3_deg 11.574 r_dihedral_angle_1_deg 5.321 r_scangle_it 3.307 r_scbond_it 2.082 r_mcangle_it 1.542 r_angle_refined_deg 1.219 r_mcbond_it 0.89 r_angle_other_deg 0.852
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.12 r_dihedral_angle_4_deg 16.653 r_dihedral_angle_3_deg 11.574 r_dihedral_angle_1_deg 5.321 r_scangle_it 3.307 r_scbond_it 2.082 r_mcangle_it 1.542 r_angle_refined_deg 1.219 r_mcbond_it 0.89 r_angle_other_deg 0.852 r_rigid_bond_restr 0.678 r_mcbond_other 0.191 r_chiral_restr 0.069 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 954 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALEPACK data scaling SHELXCDE phasing