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Crystal structure AMA1 from Toxoplasma gondii
Crystallization Crystal Properties Matthews coefficient Solvent content 1.94 36.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.15 α = 72.19 b = 76.07 β = 71.44 c = 88.25 γ = 72.9
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 52.24 96.4 0.07 13.7 4 98629 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 95.3 0.43 3.3 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 43.9 93713 4915 96.4 0.183 0.18 0.1792 0.248 0.2486 RANDOM 26.38
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.08 r_dihedral_angle_4_deg 21.837 r_dihedral_angle_3_deg 18.239 r_dihedral_angle_1_deg 7.853 r_scangle_it 4.972 r_scbond_it 3.273 r_mcangle_it 2.024 r_angle_refined_deg 1.932 r_mcbond_it 1.185 r_chiral_restr 0.155
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.08 r_dihedral_angle_4_deg 21.837 r_dihedral_angle_3_deg 18.239 r_dihedral_angle_1_deg 7.853 r_scangle_it 4.972 r_scbond_it 3.273 r_mcangle_it 2.024 r_angle_refined_deg 1.932 r_mcbond_it 1.185 r_chiral_restr 0.155 r_bond_refined_d 0.023 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12427 Nucleic Acid Atoms Solvent Atoms 1170 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement