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First two Cadherin-like domains from Human RET
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 288 1.6 M (NH4)2SO4, 50 MM TRIS PH 7.5, 4% (V/V) 1\,4 BUTANEDIOL AT 15 DEG C.
Crystal Properties Matthews coefficient Solvent content 3.77 67.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.074 α = 90 b = 86.074 β = 90 c = 110.475 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRRORS 2007-09-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.946, 1.514 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 55.3 99.8 0.08 20.7 11.6 33291 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 100 0.86 3.2 11.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT NONE 2 33.86 27156 1447 99.7 0.184 0.181 0.1803 0.228 0.2263 RANDOM 31.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.862 r_dihedral_angle_4_deg 17.868 r_dihedral_angle_3_deg 15.522 r_dihedral_angle_1_deg 7.84 r_scangle_it 5.362 r_scbond_it 3.887 r_mcangle_it 2.751 r_angle_refined_deg 2.587 r_mcbond_it 1.773 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.862 r_dihedral_angle_4_deg 17.868 r_dihedral_angle_3_deg 15.522 r_dihedral_angle_1_deg 7.84 r_scangle_it 5.362 r_scbond_it 3.887 r_mcangle_it 2.751 r_angle_refined_deg 2.587 r_mcbond_it 1.773 r_nbtor_refined 0.316 r_nbd_refined 0.218 r_symmetry_hbond_refined 0.206 r_chiral_restr 0.198 r_xyhbond_nbd_refined 0.196 r_symmetry_vdw_refined 0.166 r_bond_refined_d 0.032 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1921 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling autoSHARP phasing