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Crystal structure of Sclerotinia sclerotiorum agglutinin SSA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model PHYRE MODEL GENERATED BY PHYRE SERVER
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 2.1 M SODIUM CHLORIDE, 0.1 M SODIUM ACETATE, PH 4.6
Crystal Properties Matthews coefficient Solvent content 3.03 59.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.318 α = 90 b = 127.318 β = 90 c = 86.652 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2006-03-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 68 96.2 0.07 16.8 4.6 100976 16.68
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 80.2 0.45 2.6 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT MODEL GENERATED BY PHYRE SERVER 1.6 110.43 96905 4061 96.08 0.1409 0.14001 0.1704 0.16197 0.1863 RANDOM 22.309
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.42 0.21 0.42 -0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.185 r_dihedral_angle_4_deg 19.873 r_dihedral_angle_3_deg 13.612 r_dihedral_angle_1_deg 7.534 r_scangle_it 3.147 r_mcangle_it 2.535 r_scbond_it 2.013 r_mcbond_it 1.611 r_angle_refined_deg 1.506 r_angle_other_deg 0.897
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.185 r_dihedral_angle_4_deg 19.873 r_dihedral_angle_3_deg 13.612 r_dihedral_angle_1_deg 7.534 r_scangle_it 3.147 r_mcangle_it 2.535 r_scbond_it 2.013 r_mcbond_it 1.611 r_angle_refined_deg 1.506 r_angle_other_deg 0.897 r_mcbond_other 0.542 r_chiral_restr 0.099 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4651 Nucleic Acid Atoms Solvent Atoms 710 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing