X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1HCVPDB ENTRY 1HCV

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
130% PEG 1000, 100 MM PHOSPHATE/ CITRATE PH 4.4, 100 MM LISO4
Crystal Properties
Matthews coefficientSolvent content
2.2450.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.948α = 90
b = 59.342β = 90.01
c = 81.651γ = 90
Symmetry
Space GroupP 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-1ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.119.7599.50.0623.67.22041831
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.11.1499.80.193.083.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1HCV1.119.512041821078899.50.2040.2030.22RANDOM12.41
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.030.020.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.271
r_dihedral_angle_4_deg17.103
r_dihedral_angle_3_deg10.709
r_dihedral_angle_1_deg5.599
r_scangle_it2.517
r_scbond_it1.674
r_mcangle_it1.161
r_angle_refined_deg1.119
r_mcbond_it0.739
r_nbtor_refined0.298
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.271
r_dihedral_angle_4_deg17.103
r_dihedral_angle_3_deg10.709
r_dihedral_angle_1_deg5.599
r_scangle_it2.517
r_scbond_it1.674
r_mcangle_it1.161
r_angle_refined_deg1.119
r_mcbond_it0.739
r_nbtor_refined0.298
r_nbd_refined0.194
r_symmetry_vdw_refined0.191
r_symmetry_hbond_refined0.182
r_xyhbond_nbd_refined0.085
r_chiral_restr0.077
r_bond_refined_d0.006
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3568
Nucleic Acid Atoms
Solvent Atoms789
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKLdata reduction
SCALEPACKdata scaling
PHASERphasing