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glycoside hydrolase family 77 4-alpha-glucanotransferase from thermus brockianus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OWC PDB ENTRY 2OWC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1M BIS-TRIS PH6.5, 45% PPGP400, 12% INOSITOL(ADDITIVE)
Crystal Properties Matthews coefficient Solvent content 3.57 65.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.357 α = 90 b = 104.357 β = 90 c = 263.759 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 294 CCD ADSC CCD 2008-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 4A PAL/PLS 4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.36 29.93 99.8 0.09 34.06 21.4 35592 21.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.36 2.44 96 0.36 5.36 14.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2OWC 2.36 29.93 35592 1512 99.8 0.215 0.215 0.2105 0.24 0.2384 RANDOM 39.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.53 -1.53 3.06
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21.6 c_scangle_it 3.31 c_mcangle_it 2.31 c_scbond_it 2.17 c_mcbond_it 1.44 c_angle_deg 1.2 c_improper_angle_d 0.79 c_bond_d 0.006 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21.6 c_scangle_it 3.31 c_mcangle_it 2.31 c_scbond_it 2.17 c_mcbond_it 1.44 c_angle_deg 1.2 c_improper_angle_d 0.79 c_bond_d 0.006 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4045 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 34
Software Software Software Name Purpose CNS refinement PHASER phasing