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BtGH84 D243N in complex with 5F-oxazoline
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CHO PDB ENTRY 2CHO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.6M NH4AC, 10% GLYCEROL, 14% PEG3350, 0.1M MES PH6
Crystal Properties Matthews coefficient Solvent content 2.79 55.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.38 α = 104.14 b = 93.82 β = 94.06 c = 98.88 γ = 103.08
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2008-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 34.33 96.2 0.1 7.3 2.2 132087 2 15.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 94.9 0.45 2.1 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2CHO 1.9 34.33 124524 6621 96.29 0.18608 0.18409 0.1927 0.22349 0.2304 RANDOM 27.829
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.42 -0.42 -0.5 0.59 -1.75 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.32 r_dihedral_angle_4_deg 16.476 r_dihedral_angle_3_deg 14.549 r_dihedral_angle_1_deg 5.932 r_scangle_it 2.707 r_scbond_it 1.798 r_angle_refined_deg 1.364 r_mcangle_it 0.949 r_mcbond_it 0.563 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.32 r_dihedral_angle_4_deg 16.476 r_dihedral_angle_3_deg 14.549 r_dihedral_angle_1_deg 5.932 r_scangle_it 2.707 r_scbond_it 1.798 r_angle_refined_deg 1.364 r_mcangle_it 0.949 r_mcbond_it 0.563 r_chiral_restr 0.092 r_bond_refined_d 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_refined r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10361 Nucleic Acid Atoms Solvent Atoms 1118 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement PHASER phasing