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Structure of the HET-S N-terminal domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WVN PDB ENTRY 2WVN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 292 CRYSTALLIZED AT 292K IN 50 MM HEPES PH 7.5, 4.0 M NACL
Crystal Properties Matthews coefficient Solvent content 4.35 71.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.26 α = 90 b = 95.26 β = 90 c = 170.65 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 40 99.3 0.05 23.8 7 40556 -10 61.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.44 99.1 0.57 3.6 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT PDB ENTRY 2WVN 2.3 40.1 38256 2027 99.36 0.22705 0.22546 0.2605 0.25693 0.2818 RANDOM 57.342
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.39 -0.2 -0.39 0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.933 r_dihedral_angle_4_deg 20.722 r_dihedral_angle_3_deg 20.59 r_dihedral_angle_1_deg 5.282 r_scangle_it 2.32 r_scbond_it 1.455 r_angle_refined_deg 1.411 r_mcangle_it 1.066 r_mcbond_it 0.586 r_nbtor_refined 0.285
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.933 r_dihedral_angle_4_deg 20.722 r_dihedral_angle_3_deg 20.59 r_dihedral_angle_1_deg 5.282 r_scangle_it 2.32 r_scbond_it 1.455 r_angle_refined_deg 1.411 r_mcangle_it 1.066 r_mcbond_it 0.586 r_nbtor_refined 0.285 r_symmetry_vdw_refined 0.266 r_nbd_refined 0.188 r_symmetry_hbond_refined 0.175 r_xyhbond_nbd_refined 0.131 r_chiral_restr 0.103 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3480 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing