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Crystal Structure Analysis of Klebsiella sp ASR1 Phytase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 12% PEG8000, 0.08 M (NH4)2SO4, 0.1 M SODIUM ACETATE, 1.5 MM PHYTATE
Crystal Properties Matthews coefficient Solvent content 2.8 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.713 α = 90 b = 122.929 β = 90 c = 205.402 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.57 49.15 99.2 0.08 5.1 66228
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.57 49.15 62787 3356 99.23 0.20074 0.19846 0.24301 0.2337 RANDOM 24.105
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.02 -0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.084 r_dihedral_angle_4_deg 17.452 r_dihedral_angle_3_deg 14.645 r_dihedral_angle_1_deg 5.858 r_scangle_it 3.454 r_scbond_it 2.294 r_angle_refined_deg 1.218 r_mcangle_it 1.076 r_angle_other_deg 0.858 r_mcbond_it 0.813
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.084 r_dihedral_angle_4_deg 17.452 r_dihedral_angle_3_deg 14.645 r_dihedral_angle_1_deg 5.858 r_scangle_it 3.454 r_scbond_it 2.294 r_angle_refined_deg 1.218 r_mcangle_it 1.076 r_angle_other_deg 0.858 r_mcbond_it 0.813 r_nbd_refined 0.215 r_symmetry_vdw_other 0.212 r_nbd_other 0.191 r_symmetry_hbond_refined 0.187 r_nbtor_refined 0.178 r_symmetry_vdw_refined 0.143 r_xyhbond_nbd_refined 0.134 r_mcbond_other 0.125 r_nbtor_other 0.085 r_chiral_restr 0.063 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12210 Nucleic Acid Atoms Solvent Atoms 226 Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling