☰ Navigation Tabs
GCN4 leucine zipper mutant with three IxxNTxx motifs coordinating chloride and nitrate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WQ1 PDB ENTRY 2WQ1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 25,5% (W/V) PEG 4000, 15% (V/V) GLYCEROL, 170MM NA-ACETATE, 90MM TRIS PH 8.5
Crystal Properties Matthews coefficient Solvent content 2 39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.67 α = 90 b = 56.67 β = 90 c = 56.67 γ = 90
Symmetry Space Group I 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.22 23 99.4 0.04 17.6 3.57 9094 17.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.22 1.3 99.5 0.63 2.01 3.49
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2WQ1 1.22 23.14 8639 455 99.43 0.14351 0.14065 0.1505 0.19989 0.2054 RANDOM 13.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.558 r_dihedral_angle_3_deg 14.189 r_scangle_it 9.429 r_dihedral_angle_4_deg 9.179 r_sphericity_free 6.979 r_scbond_it 6.336 r_sphericity_bonded 5.893 r_mcangle_it 5.562 r_dihedral_angle_1_deg 4.887 r_mcbond_it 4.259
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.558 r_dihedral_angle_3_deg 14.189 r_scangle_it 9.429 r_dihedral_angle_4_deg 9.179 r_sphericity_free 6.979 r_scbond_it 6.336 r_sphericity_bonded 5.893 r_mcangle_it 5.562 r_dihedral_angle_1_deg 4.887 r_mcbond_it 4.259 r_mcbond_other 4.17 r_rigid_bond_restr 2.745 r_angle_refined_deg 1.51 r_angle_other_deg 0.957 r_chiral_restr 0.109 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 259 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing