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Salmonella enterica SadA 483-523 fused to GCN4 adaptors (SadAK3b-V1, out-of-register fusion)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GCM PDB ENTRY 1GCM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 10% (W/V) PEG 4000, 10% (V/V) ISOPOPANOL, 3% (W/V) 1,5-DIAMINOPENTANE DIHYDROCHLORIDE, 100 MM NA-CITRATE PH 5.6
Crystal Properties Matthews coefficient Solvent content 2.7 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.13 α = 90 b = 62.53 β = 90 c = 172.57 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 36 87.8 0.13 8 3.29 10608 41
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.81 78.3 0.65 2.53 3.25
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GCM 2.65 35.36 10114 529 88.54 0.26989 0.26704 0.2699 0.32729 0.3302 RANDOM 36.188
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 3.88 -4.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 30.119 r_dihedral_angle_2_deg 29.402 r_dihedral_angle_3_deg 20.77 r_scangle_it 9.519 r_dihedral_angle_1_deg 6.219 r_scbond_it 6.103 r_angle_other_deg 4.196 r_mcangle_it 3.751 r_mcbond_it 2.046 r_angle_refined_deg 1.551
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 30.119 r_dihedral_angle_2_deg 29.402 r_dihedral_angle_3_deg 20.77 r_scangle_it 9.519 r_dihedral_angle_1_deg 6.219 r_scbond_it 6.103 r_angle_other_deg 4.196 r_mcangle_it 3.751 r_mcbond_it 2.046 r_angle_refined_deg 1.551 r_nbd_refined 0.253 r_symmetry_hbond_refined 0.236 r_symmetry_vdw_other 0.225 r_nbtor_refined 0.215 r_nbd_other 0.205 r_symmetry_vdw_refined 0.179 r_xyhbond_nbd_refined 0.136 r_nbtor_other 0.104 r_chiral_restr 0.087 r_bond_refined_d 0.018 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2277 Nucleic Acid Atoms Solvent Atoms 19 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing