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Structure of the N-terminal capsid domain of HIV-2
Crystallization Crystal Properties Matthews coefficient Solvent content 1.61 23.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.88 α = 90 b = 51.12 β = 90 c = 75.18 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 41 96.5 0.07 11.2 3.6 23059 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.5 88.57 2 23059 5669 99.791 0.156 0.154 0.1726 0.1858 16.659
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.329 -0.585 0.256
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.658 r_dihedral_angle_4_deg 21.092 r_dihedral_angle_3_deg 14.74 r_scangle_it 6.904 r_dihedral_angle_1_deg 6.584 r_scbond_it 5.016 r_mcangle_it 2.82 r_angle_refined_deg 2.438 r_mcbond_it 1.948 r_symmetry_vdw_refined 0.359
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.658 r_dihedral_angle_4_deg 21.092 r_dihedral_angle_3_deg 14.74 r_scangle_it 6.904 r_dihedral_angle_1_deg 6.584 r_scbond_it 5.016 r_mcangle_it 2.82 r_angle_refined_deg 2.438 r_mcbond_it 1.948 r_symmetry_vdw_refined 0.359 r_nbtor_refined 0.348 r_symmetry_hbond_refined 0.267 r_xyhbond_nbd_refined 0.243 r_chiral_restr 0.159 r_bond_refined_d 0.031 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1256 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement