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Sesbania mosaic virus capsid protein dimer mutant (rCP-DEL-N65-W170K)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1VAK PDB ENTRY 1VAK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.5 0.1 M BIS TRIS (PH 6.5) AND 28% PEG 2000
Crystal Properties Matthews coefficient Solvent content 1.97 37.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.88 α = 81.07 b = 41.95 β = 75 c = 68.65 γ = 84.25
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 41.34 93.2 0.095 9.9 2.8 10322
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.79 92 0.47 2.2 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1VAK 2.65 65.65 9828 493 93.25 0.22403 0.22055 0.2237 0.29399 0.2965 RANDOM 58.912
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.64 4.21 -2.12 -0.7 -2.59 -0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.474 r_dihedral_angle_4_deg 25.321 r_dihedral_angle_3_deg 22.377 r_dihedral_angle_1_deg 6.185 r_scangle_it 1.645 r_angle_refined_deg 1.445 r_scbond_it 1.009 r_mcangle_it 0.785 r_mcbond_it 0.433 r_chiral_restr 0.087
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.474 r_dihedral_angle_4_deg 25.321 r_dihedral_angle_3_deg 22.377 r_dihedral_angle_1_deg 6.185 r_scangle_it 1.645 r_angle_refined_deg 1.445 r_scbond_it 1.009 r_mcangle_it 0.785 r_mcbond_it 0.433 r_chiral_restr 0.087 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2769 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing