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Structure of metal loaded Pathogenic SOD1 Mutant G93A.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2C9V PDB ENTRY 2C9V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 20% P3350, 0.2 M AMMONIUM IODIDE, pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.14 42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.488 α = 90 b = 47.157 β = 90.38 c = 56.356 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2004-02-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 23.58 93.6 0.07 13 2.6 19287 24.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 2.03 87.9 0.2 2.4 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2C9V 1.97 56.8 17148 914 93.65 0.17666 0.1736 0.1772 0.23072 0.2372 RANDOM 28.188
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.12 -1.41 -1.69 -0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.566 r_dihedral_angle_3_deg 16.025 r_dihedral_angle_4_deg 11.552 r_dihedral_angle_1_deg 10.05 r_scangle_it 4.06 r_scbond_it 2.667 r_mcangle_it 1.668 r_angle_refined_deg 1.52 r_mcbond_it 1.038 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.566 r_dihedral_angle_3_deg 16.025 r_dihedral_angle_4_deg 11.552 r_dihedral_angle_1_deg 10.05 r_scangle_it 4.06 r_scbond_it 2.667 r_mcangle_it 1.668 r_angle_refined_deg 1.52 r_mcbond_it 1.038 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.247 r_nbd_refined 0.214 r_xyhbond_nbd_refined 0.194 r_metal_ion_refined 0.174 r_symmetry_hbond_refined 0.167 r_chiral_restr 0.104 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2227 Nucleic Acid Atoms Solvent Atoms 291 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing