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Dipeptide Inhibitors of Thermolysin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2TLX PDB ENTRY 2TLX
Crystallization Crystal Properties Matthews coefficient Solvent content 1.99 37.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.71 α = 90 b = 92.71 β = 90 c = 127.6 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 20 98.7 0.09 9.3 9.1 23837 19.33
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.06 98.4 0.33 3.2 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2TLX 1.95 20 21829 1995 98.29 0.17002 0.16553 0.1658 0.21905 0.2185 RANDOM 18.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 0.15 0.31 -0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.523 r_dihedral_angle_4_deg 15.165 r_dihedral_angle_3_deg 12.213 r_dihedral_angle_1_deg 5.75 r_scangle_it 2.515 r_scbond_it 1.861 r_angle_refined_deg 1.321 r_mcangle_it 1.057 r_mcbond_it 0.68 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.523 r_dihedral_angle_4_deg 15.165 r_dihedral_angle_3_deg 12.213 r_dihedral_angle_1_deg 5.75 r_scangle_it 2.515 r_scbond_it 1.861 r_angle_refined_deg 1.321 r_mcangle_it 1.057 r_mcbond_it 0.68 r_nbtor_refined 0.303 r_symmetry_hbond_refined 0.252 r_symmetry_vdw_refined 0.246 r_xyhbond_nbd_refined 0.226 r_nbd_refined 0.223 r_chiral_restr 0.094 r_metal_ion_refined 0.093 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2432 Nucleic Acid Atoms Solvent Atoms 327 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling