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Structure of Bacillus subtilis mannanase man26
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GW1 PDB ENTRY 1GW1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 35% PEG8K, 0.2M NA ACETATE, 0.1M TRIS PH 7 TO 8
Crystal Properties Matthews coefficient Solvent content 2.5 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.498 α = 90 b = 67.498 β = 90 c = 72.966 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 100 0.05 44 7 40383
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 99 0.12 7.1 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GW1 1.7 19.48 38734 2046 99.7 0.172 0.17 0.1754 0.204 0.2072 RANDOM 16.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.02 -0.03 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.554 r_dihedral_angle_4_deg 17.175 r_dihedral_angle_3_deg 13.112 r_dihedral_angle_1_deg 5.914 r_sphericity_free 3.451 r_sphericity_bonded 2.555 r_scangle_it 2.471 r_scbond_it 1.634 r_mcangle_it 1.276 r_angle_other_deg 1.177
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.554 r_dihedral_angle_4_deg 17.175 r_dihedral_angle_3_deg 13.112 r_dihedral_angle_1_deg 5.914 r_sphericity_free 3.451 r_sphericity_bonded 2.555 r_scangle_it 2.471 r_scbond_it 1.634 r_mcangle_it 1.276 r_angle_other_deg 1.177 r_angle_refined_deg 1.099 r_rigid_bond_restr 1.086 r_mcbond_it 0.695 r_mcbond_other 0.295 r_chiral_restr 0.088 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2666 Nucleic Acid Atoms Solvent Atoms 354 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing