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Understanding how diverse mannanases recognise heterogeneous substrates
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BQC PDB ENTRY 1BQC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 1.8M AMSO4, 0.1M NA-CITRATE PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.52 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.97 α = 90 b = 111.97 β = 90 c = 47.4 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 20 94 0.05 42 4.4 32878 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.78 1.84 45 0.1 6.8 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BQC 1.78 95.35 29323 1580 93.9 0.122 0.119 0.1194 0.173 0.173 RANDOM 15.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 0.32 0.64 -0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.388 r_dihedral_angle_3_deg 11.692 r_dihedral_angle_4_deg 10.808 r_dihedral_angle_1_deg 7.499 r_sphericity_free 6.652 r_scangle_it 4.095 r_sphericity_bonded 3.571 r_scbond_it 2.834 r_mcangle_it 1.89 r_rigid_bond_restr 1.824
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.388 r_dihedral_angle_3_deg 11.692 r_dihedral_angle_4_deg 10.808 r_dihedral_angle_1_deg 7.499 r_sphericity_free 6.652 r_scangle_it 4.095 r_sphericity_bonded 3.571 r_scbond_it 2.834 r_mcangle_it 1.89 r_rigid_bond_restr 1.824 r_angle_refined_deg 1.5 r_mcbond_it 1.236 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.283 r_symmetry_hbond_refined 0.242 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.131 r_chiral_restr 0.12 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2417 Nucleic Acid Atoms Solvent Atoms 380 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing