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Crystal structure of human acyl-CoA binding domain 4 complexed with stearoyl-CoA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HBK PDB ENTRY 1HBK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.24M K_THIOCYANATE; 26W/V PEG_3350
Crystal Properties Matthews coefficient Solvent content 6.24 80.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.06 α = 90 b = 95.1 β = 110.28 c = 119.74 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH OSMIC 2009-03-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 79.78 95 0.08 4.5 4 58524 2 47.07
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.6 91 0.48 2 3
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1HBK 2.6 42.528 1.03 105269 2912 97.28 0.2069 0.206 0.1901 0.2365 0.2191
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.0124 -7.8959 2.9725 -0.838
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 22.581 f_angle_d 1.481 f_chiral_restr 0.07 f_plane_restr 0.02 f_bond_d 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4278 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms 584
Software Software Software Name Purpose PHENIX refinement MOSFLM data reduction SCALA data scaling PHASER phasing