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Crystal structure of the G243A mutant of CYP130 from M. tuberculosis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2UUQ PDB ENTRY 2UUQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.2 1.5 M AMMONIUM SULFATE, 0.1 M CITRIC ACID PH 5.2, 3% ISOPROPYL ALCOHOL
Crystal Properties Matthews coefficient Solvent content 2.1 41.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 160.243 α = 90 b = 54.093 β = 96.21 c = 43.718 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC CCD MIRRORS 2009-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 97 0.03 45.3 3.5 59681 16.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 78.2 0.12 9.5 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2UUQ 1.5 79.65 54979 2922 96.9 0.185 0.183 0.1812 0.213 0.2085 RANDOM 16.48
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -0.74 -0.41 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.308 r_dihedral_angle_4_deg 15.443 r_dihedral_angle_3_deg 13.347 r_dihedral_angle_1_deg 4.93 r_sphericity_free 4.199 r_scangle_it 2.984 r_sphericity_bonded 2.893 r_scbond_it 2.011 r_mcangle_it 1.335 r_angle_refined_deg 1.225
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.308 r_dihedral_angle_4_deg 15.443 r_dihedral_angle_3_deg 13.347 r_dihedral_angle_1_deg 4.93 r_sphericity_free 4.199 r_scangle_it 2.984 r_sphericity_bonded 2.893 r_scbond_it 2.011 r_mcangle_it 1.335 r_angle_refined_deg 1.225 r_rigid_bond_restr 1.139 r_mcbond_it 0.809 r_chiral_restr 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3055 Nucleic Acid Atoms Solvent Atoms 323 Heterogen Atoms 83
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing