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EBV dUTPase inactive mutant deleted of motif V
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BSY PDB ENTRY 2BSY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 0.1 M TRIS PH 8.5, 20 % PEG 3350, 200 MM LISO4, AND 10 MM DUTP
Crystal Properties Matthews coefficient Solvent content 2.15 42.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.238 α = 90 b = 103.238 β = 90 c = 47.697 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR 2006-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 72.9 99.5 0.06 7.2 3.8 17157 32.09
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 99.9 0.43 1.7 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BSY 2 51.64 16194 865 99.4 0.215 0.212 0.2083 0.272 0.2663 RANDOM 35.51
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.03 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.586 r_dihedral_angle_4_deg 23.896 r_dihedral_angle_3_deg 17.428 r_dihedral_angle_1_deg 6.9 r_scangle_it 3.992 r_scbond_it 2.465 r_angle_refined_deg 1.719 r_mcangle_it 1.638 r_mcbond_it 0.893 r_chiral_restr 0.152
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.586 r_dihedral_angle_4_deg 23.896 r_dihedral_angle_3_deg 17.428 r_dihedral_angle_1_deg 6.9 r_scangle_it 3.992 r_scbond_it 2.465 r_angle_refined_deg 1.719 r_mcangle_it 1.638 r_mcbond_it 0.893 r_chiral_restr 0.152 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1903 Nucleic Acid Atoms Solvent Atoms 84 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing