☰ Navigation Tabs
Structure of BMori GOBP2 (General Odorant Binding Protein 2) with (10E,12Z)-tetradecadien-1-ol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WC5 PDB ENTRY 2WC5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 30% PEG 4000, 200MM MGCL2, 100MM TRIS PH 8.5
Crystal Properties Matthews coefficient Solvent content 1.8 33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.073 α = 90 b = 33.073 β = 90 c = 172.294 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2008-05-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 57.5 94.7 0.07 13.3 6 19390
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.48 89.6 0.25 4.8 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2WC5 1.4 57.5 20366 1051 94.3 0.179 0.176 0.1738 0.228 0.2165 RANDOM 14.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.67 r_dihedral_angle_4_deg 14.975 r_dihedral_angle_3_deg 13.725 r_scangle_it 5.403 r_dihedral_angle_1_deg 4.978 r_scbond_it 3.42 r_mcangle_it 2.193 r_angle_refined_deg 2.004 r_mcbond_it 1.357 r_chiral_restr 0.126
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.67 r_dihedral_angle_4_deg 14.975 r_dihedral_angle_3_deg 13.725 r_scangle_it 5.403 r_dihedral_angle_1_deg 4.978 r_scbond_it 3.42 r_mcangle_it 2.193 r_angle_refined_deg 2.004 r_mcbond_it 1.357 r_chiral_restr 0.126 r_bond_refined_d 0.023 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1126 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling