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CANINE ADENOVIRUS TYPE 2 FIBRE HEAD IN COMPLEX WITH CAR DOMAIN D1 AND SIALIC ACID
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J1K PDB ENTRY 2J1K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 20% POLYETHYLENE GLYCOL MONOMETHYL-ETHER 550, 0.1 M BICINE, PH 9, 0.1 M NACL
Crystal Properties Matthews coefficient Solvent content 2.9 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 221.15 α = 90 b = 221.15 β = 90 c = 391.6 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 49.6 98.3 0.14 14.18 8.18 105112 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3 93.2 0.53 3.3 8.37
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2J1K 2.91 49.63 104076 1034 99 0.197 0.197 0.1957 0.254 0.2463 RANDOM 33.92
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.54 -1.54 3.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.576 r_dihedral_angle_3_deg 15.872 r_dihedral_angle_4_deg 14.287 r_dihedral_angle_1_deg 6.699 r_scangle_it 1.448 r_angle_refined_deg 1.363 r_angle_other_deg 0.977 r_scbond_it 0.823 r_mcangle_it 0.391 r_mcbond_it 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.576 r_dihedral_angle_3_deg 15.872 r_dihedral_angle_4_deg 14.287 r_dihedral_angle_1_deg 6.699 r_scangle_it 1.448 r_angle_refined_deg 1.363 r_angle_other_deg 0.977 r_scbond_it 0.823 r_mcangle_it 0.391 r_mcbond_it 0.305 r_symmetry_hbond_refined 0.211 r_nbd_refined 0.194 r_symmetry_vdw_other 0.194 r_nbd_other 0.19 r_symmetry_vdw_refined 0.187 r_nbtor_refined 0.177 r_chiral_restr 0.149 r_xyhbond_nbd_refined 0.124 r_nbtor_other 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 28130 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms 384
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing