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RU486 bound to the progesterone receptor in a destabilized agonistic conformation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 22.5% PEG4000, 0.1M HEPES 6.5, 100 MM LI2SO4
Crystal Properties Matthews coefficient Solvent content 2.12 41.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.164 α = 90 b = 63.897 β = 95.57 c = 70.051 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-11-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 47 96.1 0.1 7.3 3.4 45609 -5 21.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 77.8 0.9 1.2 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 69.67 43248 2333 96 0.187 0.185 0.2028 0.218 0.2324 RANDOM 9.02
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.12 -0.06 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.596 r_dihedral_angle_3_deg 13.045 r_dihedral_angle_4_deg 10.728 r_dihedral_angle_1_deg 4.817 r_scangle_it 1.926 r_mcangle_it 1.747 r_scbond_it 1.23 r_angle_refined_deg 1.082 r_mcbond_it 1.064 r_angle_other_deg 0.844
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.596 r_dihedral_angle_3_deg 13.045 r_dihedral_angle_4_deg 10.728 r_dihedral_angle_1_deg 4.817 r_scangle_it 1.926 r_mcangle_it 1.747 r_scbond_it 1.23 r_angle_refined_deg 1.082 r_mcbond_it 1.064 r_angle_other_deg 0.844 r_chiral_restr 0.059 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4046 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling