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Aplysia californica AChBP bound to in silico compound 31
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2C9T
Crystallization Crystal Properties Matthews coefficient Solvent content 2.7 53.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.8 α = 90 b = 76.8 β = 90 c = 725.52 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 44.6 98 0.077 9.9 8.8 67908 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 98 0.49 1.6 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2C9T 2.7 42.76 65580 3549 97.6 0.239 0.237 0.2336 0.267 0.2685 RANDOM 9.65
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.93 1.47 2.93 -4.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.984 r_dihedral_angle_4_deg 16.596 r_dihedral_angle_3_deg 15.454 r_dihedral_angle_1_deg 9.917 r_scangle_it 1.948 r_angle_refined_deg 1.591 r_scbond_it 1.188 r_mcangle_it 0.757 r_mcbond_it 0.572 r_symmetry_hbond_refined 0.512
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.984 r_dihedral_angle_4_deg 16.596 r_dihedral_angle_3_deg 15.454 r_dihedral_angle_1_deg 9.917 r_scangle_it 1.948 r_angle_refined_deg 1.591 r_scbond_it 1.188 r_mcangle_it 0.757 r_mcbond_it 0.572 r_symmetry_hbond_refined 0.512 r_symmetry_vdw_refined 0.469 r_nbtor_refined 0.324 r_nbd_refined 0.22 r_xyhbond_nbd_refined 0.155 r_chiral_restr 0.093 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16360 Nucleic Acid Atoms Solvent Atoms 70 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement EVAL15 data reduction EVAL15 data scaling MOLREP phasing