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CRYSTAL STRUCTURE OF PA-IL LECTIN COMPLEXED WITH AGAL13BGAL14GLC AT 1.9 A RESOLUTION
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1L7L PDB ENTRY 1L7L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 10% PEG 5000 MME, 0.025M KSCN, 0.1M NAAC PH 4.6
Crystal Properties Matthews coefficient Solvent content 2.63 53.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.184 α = 93.93 b = 86.521 β = 98.16 c = 119.078 γ = 90.08
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2007-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 55.22 93.9 0.11 5.45 2.26 230909 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 89.1 0.36 2.08 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1L7L 1.9 55 219312 11594 93.9 0.188 0.185 0.1899 0.245 0.2473 RANDOM 10.18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.14 -0.12 0.01 1.33 0.23 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.832 r_dihedral_angle_3_deg 11.807 r_dihedral_angle_4_deg 9.408 r_dihedral_angle_1_deg 6.471 r_scangle_it 2.811 r_scbond_it 1.929 r_angle_refined_deg 1.568 r_mcangle_it 1.256 r_angle_other_deg 0.914 r_mcbond_it 0.837
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.832 r_dihedral_angle_3_deg 11.807 r_dihedral_angle_4_deg 9.408 r_dihedral_angle_1_deg 6.471 r_scangle_it 2.811 r_scbond_it 1.929 r_angle_refined_deg 1.568 r_mcangle_it 1.256 r_angle_other_deg 0.914 r_mcbond_it 0.837 r_mcbond_other 0.215 r_nbd_other 0.195 r_nbd_refined 0.193 r_symmetry_vdw_other 0.19 r_symmetry_hbond_refined 0.189 r_symmetry_vdw_refined 0.185 r_nbtor_refined 0.171 r_xyhbond_nbd_refined 0.166 r_metal_ion_refined 0.115 r_chiral_restr 0.092 r_nbtor_other 0.085 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 21559 Nucleic Acid Atoms Solvent Atoms 3046 Heterogen Atoms 920
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing