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Crystal structure of PorB from Corynebacterium glutamicum (crystal form III)
Crystallization Crystal Properties Matthews coefficient Solvent content 3.37 63.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.392 α = 90 b = 78.392 β = 90 c = 191.859 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS SLS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.16 60.75 99.4 0.06 23.9 8.4 10828 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.16 60.75 10285 542 99.4 0.282 0.281 0.2752 0.307 0.3097 RANDOM 109.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.07 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.348 r_dihedral_angle_4_deg 21.594 r_dihedral_angle_3_deg 17.83 r_dihedral_angle_1_deg 5.035 r_angle_refined_deg 0.911 r_nbtor_refined 0.291 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.105 r_chiral_restr 0.074
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.348 r_dihedral_angle_4_deg 21.594 r_dihedral_angle_3_deg 17.83 r_dihedral_angle_1_deg 5.035 r_angle_refined_deg 0.911 r_nbtor_refined 0.291 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.105 r_chiral_restr 0.074 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2230 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement