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Fe-FutA2 from Synechocystis PCC6803
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VOZ PDB ENTRY 2VOZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 27% PEG 4000, 0.2M MAGNESIUM CHLORIDE, 0.1M 2-(N-MORPHOLINO)ETHANESULPHONIC ACID (MES) PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.46 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.34 α = 90 b = 51.6 β = 98.5 c = 100.74 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 64.4 96.4 0.1 11.9 3 20641
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 99.1 0.29 3.8 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2VOZ 2.7 30.21 19539 1059 96.3 0.218 0.215 0.2168 0.276 0.2784 RANDOM 21.27
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.11 0.07 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.214 r_dihedral_angle_4_deg 19.136 r_dihedral_angle_3_deg 17.196 r_dihedral_angle_1_deg 5.505 r_scangle_it 1.956 r_angle_refined_deg 1.185 r_scbond_it 1.16 r_mcangle_it 0.805 r_mcbond_it 0.45 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.214 r_dihedral_angle_4_deg 19.136 r_dihedral_angle_3_deg 17.196 r_dihedral_angle_1_deg 5.505 r_scangle_it 1.956 r_angle_refined_deg 1.185 r_scbond_it 1.16 r_mcangle_it 0.805 r_mcbond_it 0.45 r_nbtor_refined 0.305 r_nbd_refined 0.207 r_symmetry_hbond_refined 0.199 r_symmetry_vdw_refined 0.162 r_xyhbond_nbd_refined 0.159 r_chiral_restr 0.073 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4876 Nucleic Acid Atoms Solvent Atoms 22 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing