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N75A mutant of E9 DNase domain in complex with Im9
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EMV PDB ENTRY 1EMV
Crystallization Crystal Properties Matthews coefficient Solvent content 2.3 47.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.28 α = 90 b = 77.94 β = 100.07 c = 41.728 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 40 98.9 0.08 22.2 7.6 29843
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 98.9 0.39 3.9 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1EMV 1.6 41.17 28303 1523 98.9 0.17 0.168 0.1668 0.203 0.2016 RANDOM 17.28
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.67 -0.54 -0.94 1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.847 r_dihedral_angle_4_deg 16.254 r_dihedral_angle_3_deg 12.8 r_dihedral_angle_1_deg 5.566 r_scangle_it 5.312 r_scbond_it 3.377 r_mcangle_it 2.053 r_angle_refined_deg 1.771 r_mcbond_it 1.304 r_xyhbond_nbd_refined 0.252
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.847 r_dihedral_angle_4_deg 16.254 r_dihedral_angle_3_deg 12.8 r_dihedral_angle_1_deg 5.566 r_scangle_it 5.312 r_scbond_it 3.377 r_mcangle_it 2.053 r_angle_refined_deg 1.771 r_mcbond_it 1.304 r_xyhbond_nbd_refined 0.252 r_symmetry_vdw_refined 0.247 r_nbd_refined 0.223 r_symmetry_hbond_refined 0.213 r_chiral_restr 0.144 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1670 Nucleic Acid Atoms Solvent Atoms 326 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing