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CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF LETHAL TOXIN FROM CLOSTRIDIUM SORDELLII IN COMPLEX WITH UDP-GLC AND CALCIUM ION
Crystallization Crystal Properties Matthews coefficient Solvent content 2.89 57.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.17 α = 90 b = 188.59 β = 90 c = 203.1 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 69.17 96.9 0.1 9.8 3.8 95620 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 86 0.26 4.4 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 69.17 92751 2869 100 0.236 0.235 0.2321 0.273 0.2697 RANDOM 34.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.66 2.19 -2.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.147 r_dihedral_angle_3_deg 16.094 r_dihedral_angle_4_deg 11.504 r_dihedral_angle_1_deg 6.396 r_scangle_it 3.349 r_scbond_it 2.244 r_angle_refined_deg 1.503 r_mcangle_it 1.372 r_mcbond_it 1.003 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.147 r_dihedral_angle_3_deg 16.094 r_dihedral_angle_4_deg 11.504 r_dihedral_angle_1_deg 6.396 r_scangle_it 3.349 r_scbond_it 2.244 r_angle_refined_deg 1.503 r_mcangle_it 1.372 r_mcbond_it 1.003 r_nbtor_refined 0.313 r_symmetry_vdw_refined 0.256 r_symmetry_hbond_refined 0.232 r_nbd_refined 0.226 r_xyhbond_nbd_refined 0.175 r_chiral_restr 0.104 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13201 Nucleic Acid Atoms Solvent Atoms 199 Heterogen Atoms 111
Software Software Software Name Purpose REFMAC refinement PHASER phasing