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COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CCC PDB ENTRY 2CCC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.2 M MGCL2, 2.0 M NACL, 0.1 M NA HEPES PH 7.5 AND 30% PEG400
Crystal Properties Matthews coefficient Solvent content 3.41 63.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.704 α = 90 b = 141.704 β = 90 c = 141.704 γ = 90
Symmetry Space Group F 41 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-08-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.69 20 95.4 0.09 19.8 12.7 171130 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.69 1.8 79 0.52 4.1 8.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2CCC 1.7 19.03 12770 703 96.6 0.186 0.184 0.1837 0.213 0.2124 RANDOM 18.22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.182 r_dihedral_angle_3_deg 11.584 r_dihedral_angle_4_deg 10.926 r_dihedral_angle_1_deg 6.03 r_scangle_it 3.717 r_scbond_it 1.985 r_mcangle_it 1.588 r_angle_refined_deg 1.458 r_mcbond_it 0.843 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.182 r_dihedral_angle_3_deg 11.584 r_dihedral_angle_4_deg 10.926 r_dihedral_angle_1_deg 6.03 r_scangle_it 3.717 r_scbond_it 1.985 r_mcangle_it 1.588 r_angle_refined_deg 1.458 r_mcbond_it 0.843 r_nbtor_refined 0.303 r_symmetry_hbond_refined 0.224 r_nbd_refined 0.209 r_xyhbond_nbd_refined 0.204 r_symmetry_vdw_refined 0.188 r_chiral_restr 0.095 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 473 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling