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CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF LETHAL TOXIN FROM CLOSTRIDIUM SORDELLII IN COMPLEX WITH UDP-GLC AND MANGANESE ION
Crystallization Crystal Properties Matthews coefficient Solvent content 2.93 57.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.287 α = 90 b = 190.322 β = 90 c = 204.419 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.53 90.17 99.7 0.12 12.1 5.9 75590 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.53 2.62 100 0.41 4.3 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.53 90.17 71809 3780 99.7 0.247 0.244 0.2395 0.288 0.2801 RANDOM 33.58
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.43 2.03 -2.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.059 r_dihedral_angle_4_deg 16.847 r_dihedral_angle_3_deg 15.9 r_dihedral_angle_1_deg 5.157 r_scangle_it 1.441 r_angle_refined_deg 1.108 r_scbond_it 0.883 r_mcangle_it 0.879 r_mcbond_it 0.488 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.059 r_dihedral_angle_4_deg 16.847 r_dihedral_angle_3_deg 15.9 r_dihedral_angle_1_deg 5.157 r_scangle_it 1.441 r_angle_refined_deg 1.108 r_scbond_it 0.883 r_mcangle_it 0.879 r_mcbond_it 0.488 r_nbtor_refined 0.303 r_nbd_refined 0.198 r_symmetry_hbond_refined 0.171 r_symmetry_vdw_refined 0.153 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.076 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13311 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms 113
Software Software Software Name Purpose REFMAC refinement PHASER phasing