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Formyl-CoA transferase mutant variant W48F
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1P5H PDB ENTRY 1P5H
Crystallization Crystal Properties Matthews coefficient Solvent content 2.72 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 152.716 α = 90 b = 152.716 β = 90 c = 99.448 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2007-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 56.25 97.9 0.13 8.8 4.2 80837 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.06 99.5 0.53 2.7 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1P5H 1.95 30 76793 4030 97.3 0.168 0.166 0.1718 0.201 0.2075 RANDOM 15.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 0.29 -0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.438 r_dihedral_angle_4_deg 15.376 r_dihedral_angle_3_deg 14.17 r_dihedral_angle_1_deg 5.847 r_scangle_it 2.236 r_scbond_it 1.353 r_angle_refined_deg 1.107 r_mcangle_it 0.998 r_angle_other_deg 0.904 r_mcbond_it 0.539
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.438 r_dihedral_angle_4_deg 15.376 r_dihedral_angle_3_deg 14.17 r_dihedral_angle_1_deg 5.847 r_scangle_it 2.236 r_scbond_it 1.353 r_angle_refined_deg 1.107 r_mcangle_it 0.998 r_angle_other_deg 0.904 r_mcbond_it 0.539 r_nbd_refined 0.197 r_nbd_other 0.185 r_symmetry_vdw_other 0.184 r_nbtor_refined 0.169 r_xyhbond_nbd_refined 0.146 r_symmetry_hbond_refined 0.131 r_symmetry_vdw_refined 0.128 r_nbtor_other 0.082 r_chiral_restr 0.07 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6620 Nucleic Acid Atoms Solvent Atoms 957 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing