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Formyl-CoA transferase with aspartyl-formyl anhydide intermediate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1P5H PDB ENTRY 1P5H
Crystallization Crystal Properties Matthews coefficient Solvent content 2.7 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.668 α = 90 b = 151.668 β = 90 c = 98.947 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2007-10-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 44.9 97.1 0.07 15.9 4.1 89577 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.87 1.97 81.1 0.36 4.2 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1P5H 1.89 30 85088 4473 99.3 0.173 0.171 0.1759 0.203 0.2081 RANDOM 20.01
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 0.1 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.156 r_dihedral_angle_4_deg 14.827 r_dihedral_angle_3_deg 12.817 r_dihedral_angle_1_deg 5.545 r_scangle_it 1.882 r_scbond_it 1.146 r_angle_refined_deg 1.053 r_mcangle_it 0.926 r_angle_other_deg 0.874 r_mcbond_it 0.497
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.156 r_dihedral_angle_4_deg 14.827 r_dihedral_angle_3_deg 12.817 r_dihedral_angle_1_deg 5.545 r_scangle_it 1.882 r_scbond_it 1.146 r_angle_refined_deg 1.053 r_mcangle_it 0.926 r_angle_other_deg 0.874 r_mcbond_it 0.497 r_symmetry_vdw_other 0.251 r_nbd_refined 0.191 r_nbd_other 0.18 r_nbtor_refined 0.168 r_symmetry_vdw_refined 0.126 r_xyhbond_nbd_refined 0.12 r_symmetry_hbond_refined 0.09 r_nbtor_other 0.08 r_chiral_restr 0.06 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6627 Nucleic Acid Atoms Solvent Atoms 756 Heterogen Atoms 112
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing