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Crystal structure of Aurora B kinase in complex with Reversine inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BFX PDB ENTRY 2BFX
Crystallization Crystal Properties Matthews coefficient Solvent content 2.15 42.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.736 α = 90 b = 67.6 β = 96.59 c = 116.631 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2007-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 116 98.5 0.06 20.2 3.8 72884 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74 95.5 0.25 20.2 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BFX 1.7 116.25 72884 3866 98.6 0.199 0.197 0.229 RANDOM 23.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 -0.28 2.01 -1.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.45 r_dihedral_angle_4_deg 16.229 r_dihedral_angle_3_deg 13.854 r_dihedral_angle_1_deg 4.989 r_scangle_it 2.517 r_scbond_it 1.548 r_angle_refined_deg 1.089 r_mcangle_it 1.016 r_mcbond_it 0.613 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.45 r_dihedral_angle_4_deg 16.229 r_dihedral_angle_3_deg 13.854 r_dihedral_angle_1_deg 4.989 r_scangle_it 2.517 r_scbond_it 1.548 r_angle_refined_deg 1.089 r_mcangle_it 1.016 r_mcbond_it 0.613 r_nbtor_refined 0.305 r_nbd_refined 0.191 r_symmetry_vdw_refined 0.167 r_symmetry_hbond_refined 0.156 r_xyhbond_nbd_refined 0.11 r_chiral_restr 0.072 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5237 Nucleic Acid Atoms Solvent Atoms 626 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing