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Isopenicillin N synthase with substrate analogue AsMCOV (oxygen exposed 1min 20bar)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BK0 PDB ENTRY 1BK0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 1.0M LITHIUM SULPHATE, 76MM TRIS/HCL, PH 8.5, 2.0MM FERROUS SULPHATE, 2.6MG/ML TRIPEPTIDE, 25MG/ML IPNS
Crystal Properties Matthews coefficient Solvent content 2.16 43.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.672 α = 90 b = 75.717 β = 90 c = 101.91 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2005-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 60.75 98.5 0.15 11.4 5.9 16731 19.98
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 94.4 0.43 3.8 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BK0 2.2 60.75 16043 649 98.2 0.178 0.175 0.1802 0.246 0.2485 RANDOM 4.88
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.42 0.27 -0.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.759 r_dihedral_angle_4_deg 21.159 r_dihedral_angle_3_deg 14.958 r_dihedral_angle_1_deg 6.626 r_scangle_it 2.944 r_angle_other_deg 2.289 r_scbond_it 2.163 r_angle_refined_deg 1.729 r_mcangle_it 1.06 r_mcbond_it 1.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.759 r_dihedral_angle_4_deg 21.159 r_dihedral_angle_3_deg 14.958 r_dihedral_angle_1_deg 6.626 r_scangle_it 2.944 r_angle_other_deg 2.289 r_scbond_it 2.163 r_angle_refined_deg 1.729 r_mcangle_it 1.06 r_mcbond_it 1.002 r_symmetry_vdw_other 0.269 r_symmetry_hbond_refined 0.244 r_symmetry_vdw_refined 0.239 r_nbd_other 0.22 r_nbd_refined 0.218 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.099 r_nbtor_other 0.091 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_gen_planes_other 0.005 r_bond_other_d 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2645 Nucleic Acid Atoms Solvent Atoms 168 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling REFMAC phasing