2VAS

Myosin VI (MD-insert2-CaM, Delta-Insert1) Post-rigor state


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2BKHPDB ENTRY 2BKH

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18% PEG 8000, 50MM GLYCINE PH 9.5, 6% MPD
Crystal Properties
Matthews coefficientSolvent content
3.1853.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.42α = 90
b = 100.47β = 90
c = 174.07γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2006-06-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-2ESRFID23-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.448.971000.117.28.2512182
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.531000.386.68.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2BKH2.448.284852226281000.2190.2170.256RANDOM31.35
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.97-0.891.86
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.16
r_dihedral_angle_3_deg16.872
r_dihedral_angle_4_deg16.77
r_dihedral_angle_1_deg6.554
r_scangle_it2.471
r_scbond_it1.548
r_angle_refined_deg1.222
r_mcangle_it1.034
r_mcbond_it0.806
r_nbtor_refined0.299
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.16
r_dihedral_angle_3_deg16.872
r_dihedral_angle_4_deg16.77
r_dihedral_angle_1_deg6.554
r_scangle_it2.471
r_scbond_it1.548
r_angle_refined_deg1.222
r_mcangle_it1.034
r_mcbond_it0.806
r_nbtor_refined0.299
r_symmetry_vdw_refined0.217
r_nbd_refined0.193
r_xyhbond_nbd_refined0.131
r_chiral_restr0.126
r_symmetry_hbond_refined0.123
r_bond_refined_d0.009
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7023
Nucleic Acid Atoms
Solvent Atoms154
Heterogen Atoms36

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing